This post contains affiliate links. Please see our disclosure policy.
Vegan Stuffed Butternut Squash with Lentil & Apple filling is a hearty and satisfying plant-based main course for any winter dinner and makes for a showstopping holiday meal! Easy to make ahead of time!

Even though it’s February already I am still craving all things squash and pumpkin! And trust me, you too will love this easy Stuffed Butternut Squash recipe all fall and winter long. It’s a tasty vegan and vegetarian main dish with a flavorful stuffing made of lentils, apples, onions and pecans. It’s seasoned with plenty of spices and herbs and baked inside a halved butternut squash making for a beautiful presentation.
Obviously this is a great healthy vegan meal for Christmas, Thanksgiving but really any dinner that calls for an eye-catching main.

I love me a hearty and meaty main dish that is meat-free (obviously). And this lentil stuffed butternut squash is a great way to show your family and friends that plant-based recipes can be incredibly satisfying. Nobody’s gonna leave the table hungry here and we don’t compromise on flavor either.

The apple, pecan and lentil filling is wonderfully savory and packed with such incredible flavor thanks to fennel seeds, sage, thyme and rosemary. Thanks to the brown lentils, the filling honestly tastes and feels a bit meaty, and sausagey which is crazy because there’s not even any meat substitute in it.
More Vegan Butternut Squash recipes:
More Vegan Fall & Winter recipes:
- Jalapeño Cornbread chili Casserole
- Pumpkin Mac and cheese Bake
- Vegan Pumpkin Sage Biscuits
- Easy Pumpkin Cornbread
- Pumpkin Sage pasta with Crisp Sage
Vegan Stuffed Butternut Squash with Lentil Apple Filling

Ingredients
- 1 large Butternut Squash, or two small butternut squashes
- 2 tsp oil
- 1/4 tsp salt
- generous dash of black pepper
For the Filling:
- 1 tsp oil
- 1/4 tsp fennel seeds, preferably crushed
- 1/4 tsp dried sage, or 1 tbsp chopped fresh sage
- 1/2 tsp dried thyme
- 1/4 tsp dried rosemary
- 1/4 cup of finely chopped red onion
- 2 cloves garlic, finely chopped
- 15 oz can of lentils, drained, or 1.5 cups cooked lentils
- 1/2 tsp salt
- 1/4 tsp onion powder
- 1/8 tsp black pepper
- 1/2 of an apple, chopped small
- 1/4 cup chopped pecans, omit for Nutfree
Instructions
- Slice the butternut squash into half. Remove the seed box, then drizzle, brush all over with oil, and sprinkle salt and pepper.
- Bake at 400 degrees F (205 C) for 45-50 minutes, or until cooked completely in the middle.
- Meanwhile, make your lentil filling. Heat a skillet over medium heat, add oil, then add in your fennel seeds, and herbs, sage, thyme, rosemary, and mix in.
- Add in the onion, garlic, and mix in, and cook until the onion is golden.
- Add in your lentils, salt, onion powder, black pepper, and mix in, then add in the apples, pecans, and mix in, and cook for 2-3 minutes, or until the mixture is heated through. Taste and adjust flavor.
- Remove the butternut squash from the oven. Scoop out the middle portion of the butternut squash, leaving about half an inch in the squash.
- Mash the butternut squash that you removed and lightly mix into the lentils. You dont want to completely mix it in, there should be some blobs of butternut squash in the lentil mixture. Also if you handle the mixture too much, the lentils would start to break down.
- Spoon the lentil mixture into the scooped out butternut squash. sprinkle a little bit of salt and pepper, and bake at 400 degrees F for 10 minutes, or broil for 1-2 minutes.
- Remove from the oven and serve as is, or serve with a drizzle of lemon juice, or a side of gravy . To make this without nuts, just omit the pecans.
Video
Notes
- If you don’t find any butternut, use acorn squash.
- Instead of apples, you could easily use pears – make sure they are still a bit hard or they will turn into mush while baking.
- Walnuts or hazelnuts make a great substitution for pecans.
- I used a mix of thyme, rosemary, and sage in this recipe, but you can use any combination of sturdy herbs, including oregano.
- This is delicious as is but you could also drizzle it with some tahini or vegan sour cream.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
Ingredients for Stuffed Butternut Squash:
- The filling is enough for 1 big butternut squash, or two small butternut squashes.
- For the filling we use traditional fall and winter-centric stuffing: apples, red onions, lentils as a meat substitute and pecans for crunch
- We up the flavor of the filling with traditional stuffing seasonings like fennel seeds, sage, thyme and rosemary as well as onion powder for some umami
- garlic is a must for me but you can add some garlic powder instead
- salt and pepper – always!
Tips & Substitutions:
- If you don’t find any butternut, use acorn squash.
- Instead of apples, you could easily use pears – make sure they are still a bit hard or they will turn into mush while baking.
- Walnuts or hazelnuts make a great substitution for pecans.
- I used a mix of thyme, rosemary, and sage in this recipe, but you can use any combination of sturdy herbs, including oregano.
- This is delicious as is but you could also drizzle it with some tahini or vegan sour cream.

How to make Vegan Stuffed Butternut Squash:

Slice the butternut squash into half. Remove the seeds, then drizzle, brush all over with oil, and sprinkle salt and pepper.

Bake at 400 degrees F for 45-50 minutes, or until cooked completely in the middle.

Make your lentil filling. Heat a skillet over medium heat, add oil, then add in your fennel seeds, and herbs, sage, thyme, rosemary, and mix in. Add in the onion, garlic, and mix in, and cook until the onion is golden.

Add in your lentils, salt, onion powder, black pepper, and mix in, then add in the apples, pecans, and mix in, and cook for 2-3 minutes, or until the mixture is heated through. Taste and adjust flavor.


Remove the butternut squash from the oven. Scoop out the middle portion of the butternut squash, leaving about half an inch in the squash. Mash the butternut squash that you removed and lightly mix into the lentils. You don’t want to completely mix it in, there should be some blobs of butternut squash in the lentil mixture. Also if you handle the mixture too much, the lentils would start to break down.

Spoon the lentil mixture into the scooped out butternut squash. sprinkle a little bit of salt and pepper, and bake at 400 degrees F for 10 minutes, or broil for 1-2 minutes. Remove from the oven and serve as is, or serve with a drizzle of lemon juice, or a side of gravy. To make this without nuts, just omit the pecans.
Make-Ahead Instructions:
Make the lentil filling a day or two in advance, and store in an airtight container in the fridge.
Roast the squash halves a day or two in advance, and store tightly covered or in an airtight container in the fridge. On the day of serving, stuff the squash and bake in the oven for 15 minutes !










Just made and so delicious. I used heaping teaspoon of everything and added 2 apples to make it sweeter. Definitely a repeater and perfect for Thanksgiving. Thank you as always..
Awesome!!
Wow! Tonight’s dinner was a delight. My new-food-skeptic DH loved it, as did I. I had the ingredients on hand and it came together easily in the morning, heated up beautifully when I got home from work. Company-worthy in flavor and presentation, it was such a pleasant surprise for middle of the week. (No changes made).
wow! checks all the boxes
Just look at the nutrition daily values on this! I really love it when everything comes together in such a wonderful way.
Tasty & flavorful. Easy to make. Beautiful to look at. Seasonal eating. So healthy for our bodies & minds.
Can’t wait to eat this!
This dish looks like it would be so complicated- it’s not! I made it while helping my daughter with homework and in between folding laundry. It is phenomenally delicious and hearty. It tastes like fall. I can’t wait to show this off for company
Awesome!!!
Does this freeze well? I am thinking of premaking some for the holidays
yes, actually, squash freezes well – cooked or raw. just keep the stuffing separate
Just cooked it (with pears) for lunch, thank you for great recipe again!
Amazing recipe! I loved the addition of apple, pecan, and fennel seeds! I drizzled some tahini on top, and it was perfect!
Awesome!!
This is also a very baby friendly recipe! Minus the salt. My 15 month old twins love this and has been on monthly dinner rotation in our house for months now! We are not a vegan family but man is this delicious.
that’s so wonderful to learn, i’m glad they love it as much as you!
Thanks for this great recipe!
thanks for stopping by
Absolutely delicious! Came out perfectly!
Awesome! Thanks!
This was just the right dinner for our Valentine’s Day night in! So delicious!
Awesome
I was cleaning out my pantry & refrigerator, so I used a larger amount of red onion (3/4 cup) and lentils (2-1/2 cups). I doubled the amount of Fennel, Sage, Rosemary and Thyme to compensate. It came out SO GOOD! Will definitely make this for our holiday feast in November!
Yay!